Package: convertid
Type: Package
Title: Convert Gene IDs Between Each Other and Fetch Annotations from
        Biomart
Version: 0.4.0
Date: 2026-08-24
Author: Vidal Fey [aut, cre], Henrik Edgren [aut]
Authors@R: c(person("Vidal", "Fey", email = "vidal.fey@gmail.com", role=c("aut", "cre")), person("Henrik", "Edgren", email = "henrik.edgren@gmail.com", role = "aut"))
Maintainer: Vidal Fey <vidal.fey@gmail.com>
Description: Gene Symbols or Ensembl Gene IDs are converted using the
        Bimap interface in 'AnnotationDbi' in convertId2() for the most
        common use cases in data analysis. The main function in the
        package is convert.bm() which queries BioMart using the full
        capacity of the API provided through the 'biomaRt' package.
        Presets and defaults are provided for convenience but all
        "marts", "filters" and "attributes" can be set by the user.
        Function convert.alias() converts Gene Symbols to Aliases and
        vice versa and function likely_symbol() attempts to determine
        the most likely current Gene Symbol.
Depends: R (>= 3.5.0)
Imports: AnnotationDbi, plyr, stringr, biomaRt, stats, xml2, utils,
        rappdirs, assertthat, methods, httr, BiocFileCache
Suggests: BiocManager, org.Hs.eg.db, org.Mm.eg.db, testthat (>= 3.0.0),
        mockery, curl
License: GPL-3
URL: https://github.com/vfey/convertid
BugReports: https://github.com/vfey/convertid/issues
Encoding: UTF-8
Config/roxygen2/version: 8.0.0
Config/testthat/edition: 3
NeedsCompilation: no
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://vfey.r-universe.dev
Date/Publication: 2026-08-24 13:26:55 UTC
RemoteUrl: https://github.com/vfey/convertid
RemoteRef: HEAD
RemoteSha: caa7ff62d91d713d4ca07053f5096b824dcfcfcd
Packaged: 2026-09-24 08:04:35 UTC; root