Package: convertid 0.4.0

Vidal Fey

convertid: Convert Gene IDs Between Each Other and Fetch Annotations from Biomart

Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol.

Authors:Vidal Fey [aut, cre], Henrik Edgren [aut]

convertid_0.4.0.tar.gz
convertid_0.4.0.zip(r-4.7-any)convertid_0.4.0.zip(r-4.6-any)convertid_0.4.0.zip(r-4.5-any)
convertid_0.4.0.tgz(r-4.6-any)convertid_0.4.0.tgz(r-4.5-any)
convertid_0.4.0.tar.gz(r-4.7-any)convertid_0.4.0.tar.gz(r-4.6-any)
convertid_0.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
convertid/json (API)

# Install 'convertid' in R:
install.packages('convertid', repos = c('https://vfey.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vfey/convertid/issues

On CRAN:

Conda:

4.38 score 1 stars 2 packages 1 scripts 663 downloads 7 exports 60 dependencies

Last updated from:caa7ff62d9. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE257
source / vignettesOK253
linux-releaseNOTE244
macos-releaseNOTE257
macos-oldrelNOTE211
windows-develNOTE162
windows-releaseNOTE165
windows-oldrelNOTE166
wasm-releaseOK202

Exports:convert.aliasconvert.bmconvertId2get.bmlikely_symboltodisp2unify_gene_ids

Dependencies:AnnotationDbiaskpassassertthatBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsgluehmshttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplyrpngprettyunitsprogresspurrrR6rappdirsRcpprlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrxml2XVector